MAIN KEGG FILE RESULTS

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

This table lists the enriched KEGG pathways, number of Entrez IDs in your user data set for the pathway, the corresponding Entrez IDs, and the statistics for the enriched pathway.
The statistic column lists:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, the pathway name is linked to KEGG where the user ids are highlighted, the number of user gene ids is linked to a table with information about the user ids, and the Entrez IDs are linked to Entrez Gene.

PathwayName	#Gene	EntrezGene	Statistics
Cell adhesion molecules (CAMs)	6	9369 54413 9378 4359 4685 3897	C=133;O=6;E=0.21;R=29.04;rawP=6.57e-08;adjP=4.60e-07
Glycosphingolipid biosynthesis - ganglio series	2	6489 81849	C=15;O=2;E=0.02;R=85.82;rawP=0.0002;adjP=0.0007
Protein digestion and absorption	2	1299 8645	C=81;O=2;E=0.13;R=15.89;rawP=0.0071;adjP=0.0154
Neuroactive ligand-receptor interaction	3	7433 5618 2899	C=272;O=3;E=0.42;R=7.10;rawP=0.0088;adjP=0.0154
Jak-STAT signaling pathway	2	3590 5618	C=155;O=2;E=0.24;R=8.31;rawP=0.0244;adjP=0.0342
Cytokine-cytokine receptor interaction	2	3590 5618	C=265;O=2;E=0.41;R=4.86;rawP=0.0641;adjP=0.0748
Metabolic pathways	4	2954 6489 81849 978	C=1130;O=4;E=1.76;R=2.28;rawP=0.0989;adjP=0.0989

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).